YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10175006, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVPNKITLS RIGLIPLFML FLLAPIPLGT AVLFGVEIPV SHLVALFLFV LAAATDWLDG  60
   61 YYARKWKLVT NFGKFLDPLA DKLLVTAALV GLVEIGTIPA WMAIIIISRE FAVTGIRLVA 120
  121 ASDGAVIAAS KLGKWKTVSQ IVAIIACLLY NVPFAAVGFP FMIIALWVAT ILTIVSGVDY 180
  181 FLKNKEFLLK SK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.87
Transmembrane Helix	12	34	0.88
Non-Cytoplasmic	35	40	0.73
Transmembrane Helix	41	62	0.88
Cytoplasmic	63	82	0.88
Transmembrane Helix	83	105	0.87
Non-Cytoplasmic	106	110	0.68
Transmembrane Helix	111	130	0.68
Cytoplasmic	131	136	0.66
Transmembrane Helix	137	157	0.75
Non-Cytoplasmic	158	162	0.64
Transmembrane Helix	163	182	0.91
Cytoplasmic	183	192	0.88