YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10174312, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELAKRVSTL TPSSTLAITA KAKELKEQGH DVIGLGAGEP DFNTPQYIID AAVRSMEEGH  60
   61 TKYTPSGGLP KLKEAIIEKF KQDQGLTYTA KEIFVGTGAK HVLYTLFQAL LNEGDEVIIP 120
  121 SPYWVSYPEQ VKLAGGEPVF VEGKESNDFK LTPAQLEPVL TDRTKAIIIN SPSNPTGSLY 180
  181 TQEELAALGE VCLKHNVLII SDEIYEKLVY DGAKHTSVAE ISPQLKENTV VINGVSKSHS 240
  241 MTGWRIGYAA GPEALIQAMT NLASHSTSNP TTSAQYGAIA AYTEDDGSVE KMRVAFEERL 300
  301 HTIYDKLVAI PGVSCVKPKG AFYLFPNVEE AAALTGHETV DDFVKVLLEE EKVALVPGSG 360
  361 FGAPDNVRLS YATSLELLEA AIDRIFRFVE AKRSK

Type	Start	End	Confidence
Signal Peptide	1	22	0.83
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	395	0.99