YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25487320
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVKCECGH VNPFGTVLCE SCGKPVEEND DQKGLLNMRY EGVARRSQTY TTTFIDKIWM  60
   61 FFSSVKVGIW IIVLTLVASI FGTIFPQEMY IPSNVRPETH YAEEYGVLGQ IYYQLGFHNL 120
  121 YGSWWYMALI AALGVSLIIC SLDRVVPLYR ALKTQRVTRH ENFLKRQRLF GTSNVNNVDG 180
  181 VLETVKARLE EKKYKVREEN GNLLAEKGRF SRWGPYVNHI GLIIFLMGCM FRFFPGMYVD 240
  241 ENMWIREGEV MVVPGTNSKY YLGNESFTLE LYDEEDELFA EAIERAGGAV AKNYETEAVL 300
  301 YERDPGATVG ATSELQEVAR HNIRVNDPLS YEGLSIYQID YKLHEFSVMS FTLNKKETGE 360
  361 SLGQIDVDLN NPEDEYDLGN GAKVILREYF PDYELNEQNV PSTRSRVPDN PGFIFEMITP 420
  421 ETPEGEISFV AVQQNLEPLG ENQYEMKFAD LETTHVTGLT VRKDYTLPFL FVGGFIFMVG 480
  481 LIQGSYWAHR RVWLQRVNGE VWIAGHTNKN WSSLHKEIDE AIAETGLGSP SDQLEEKEKN 540
  541 SEREKKLGKD KGGTNE

Type	Start	End	Confidence
Cytoplasmic	1	66	0.97
Transmembrane Helix	67	85	0.95
Non-Cytoplasmic	86	123	0.95
Transmembrane Helix	124	146	0.90
Cytoplasmic	147	215	0.98
Transmembrane Helix	216	236	0.91
Non-Cytoplasmic	237	466	0.96
Transmembrane Helix	467	487	0.89
Cytoplasmic	488	556	0.90