YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25489859
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRGLSFQQ GIFYIGKRHV ACAYHVNGRL KTWLRPLNQK TLLQMMKHVT QGLPVWFKLL  60
   61 VLTLLSLVLV PKLFVALGMM TWTGLPLYTL LYLAYGTHFI FPTELRKYHG AEHKVFSDRG 120
  121 LIRRARIEEI RQAEITNRYC STNMVVIYFG SVCFLTMVGL ISGLSIEPTL MYASYSSVFA 180
  181 VPIVQRVMEW RGFAWLRNII LHISYWLQRH VTTLEPDTMH MIAAIESYRR LAFREFPDRV 240
  241 RTPRKRKETR NMAIVDVTVI PIGTETPSVS AYVAEIHQVL KTYEDKVRYE LTPMSTLIEG 300
  301 ELPILFEVIQ AIHEVPFQHG IKRVATNIRI DDRRDVQRKM EEKVEAVREK LEPKEESK

Type	Start	End	Confidence
Cytoplasmic	1	54	0.96
Transmembrane Helix	55	75	0.93
Non-Cytoplasmic	76	81	0.71
Transmembrane Helix	82	101	0.88
Cytoplasmic	102	143	0.90
Transmembrane Helix	144	164	0.90
Non-Cytoplasmic	165	170	0.71
Transmembrane Helix	171	188	0.70
Cytoplasmic	189	358	0.75