YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25287889
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	107	0.98
Transmembrane Helix	108	131	0.84
Non-Cytoplasmic	132	145	0.84
Transmembrane Helix	146	167	0.92
Cytoplasmic	168	174	0.81
Transmembrane Helix	175	192	0.92
Non-Cytoplasmic	193	208	0.67
Transmembrane Helix	209	230	0.87
Cytoplasmic	231	244	0.92
Transmembrane Helix	245	268	0.89
Non-Cytoplasmic	269	286	0.82
Transmembrane Helix	287	310	0.87
Cytoplasmic	311	326	0.82
Transmembrane Helix	327	345	0.54
Non-Cytoplasmic	346	353	0.45
Transmembrane Helix	354	375	0.79
Cytoplasmic	376	382	0.56
Transmembrane Helix	383	406	0.81
Non-Cytoplasmic	407	424	0.57
Transmembrane Helix	425	449	0.88
Cytoplasmic	450	630	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYEQVAKQI IDHVGGEENV KSLVHCATRL RFSLIDHSKA DKEQLLKTDG VIAVKENGGQ  60
   61 FQVVIGNRVP EVYAAIGKIS TILDDTTSTK KGGDTGNSGN FVSRLIDVVA SIFTPLLGVM 120
  121 AGAGILKGLL AIATNVGWLD SGETTYIILH AASDSMFYFL PILLAVTAAR KFETNPFGAA 180
  181 TIAGALIYPS IVELHDSAID VTFFGIPVVL MNYTSTVFPI LLAVFAMSYV EKFCNKKIHE 240
  241 AVKNFVTPLI LLVVIVPVTL IILGPIGVYL GNGIASVIQE IFTFSPVLAG AIVAGIWQVL 300
  301 VIFGIHWGII PIILNNLSVR GEDVIKAVAA PAVFSQAGAA LGVMLRTKNK KLKALAGSTS 360
  361 ITALFGITEP AVYGVTLPLK KPFIMAVISA AVGGAIVGHY GSVAVAPGAP GLLTIPIFYP 420
  421 EDGRGFVAFV IAIIISFVLA AVLTYIVGFK DPVDDEDTLS NESGSENEVK REDDKKEPSA 480
  481 SEEIKSPLKG EVVPLTEVQD HVFSSGAMGK GVAVRPKEGR LVAPINGTVT SLFETKHAIG 540
  541 ITSDNGTEIF IHVGIDTVQL KGEHFTSFIE QGDEVAAGDV LLEFDVERIT AAGYDVITPV 600
  601 LITNAKQFSN VQTTDKREVT SEDLLIHVIK