YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25369854
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTRKVVQLF FTTLIIGSLS GTIVGLLLDL DLYTSGSVAN LIVGIIWIAG ISAAFSLIAQ  60
   61 MGFFAYLTLH RFGLGIFKSV KLWNWVQVIL IAFVVFDLIY LRYIAFAQEG ETIFHYMVMP 120
  121 LALLVYGAII AYLKAKDTNK GAFIPALFFM VVITSIEWVP ALTVNDPKWL WVYFAPLIAA 180
  181 NTWQILILHR LQQQ

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	28	0.96
Non-Cytoplasmic	29	42	0.82
Transmembrane Helix	43	67	0.89
Cytoplasmic	68	82	0.88
Transmembrane Helix	83	104	0.92
Non-Cytoplasmic	105	112	0.84
Transmembrane Helix	113	133	0.96
Cytoplasmic	134	140	0.92
Transmembrane Helix	141	162	0.92
Non-Cytoplasmic	163	168	0.91
Transmembrane Helix	169	188	0.93
Cytoplasmic	189	194	0.81