YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10172718, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRWIVQLFF ILVGGTLGFI FIPDLMAWMS IQDPTWLTNP YVGTVMGAII LFLLTFWLCD  60
   61 YIVHLMRVTE EMIVKAPVTD VLFGTMGLII GLIVAFLVGI PLGNFSIPVV STVLPIFITF 120
  121 FLGYFGFQIG FKKRDELIHL MSITRGFGKK KDEEESEARG SKLKILDTSV IIDGRIADIC 180
  181 KTGFLEGTLV IPGFVLEELQ HIADSSDVLK RNRGRRGLDI LNKIQKELPI NVEIYEGDFE 240
  241 DIQEVDSKLV KLAKVTEGMV VTNDFNLNKV CELQGVQVLN INDLANAVKP VVLPGEELNV 300
  301 QVIKDGKEQN QGVAYLDDGT MIVVEGGRDY IGKHVEVVVT SVLQTSAGRM IFAKPKLLEK 360
  361 AL

Type	Start	End	Confidence
Cytoplasmic	1	7	0.87
Transmembrane Helix	8	28	0.93
Non-Cytoplasmic	29	40	0.82
Transmembrane Helix	41	63	0.87
Cytoplasmic	64	77	0.90
Transmembrane Helix	78	100	0.89
Non-Cytoplasmic	101	106	0.74
Transmembrane Helix	107	131	0.84
Cytoplasmic	132	362	0.98