YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25369825
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTIQFYTM LSMAAMGVWL GAAIDTYHRF SKRRRMLFHW LEFINDVLFW LIQGLILFYV  60
   61 LLQVNQGEIR FYIFLAILCG YAAYQALFRQ VYQKLLERGI QFVLALYRFG RKMIHIFFVS 120
  121 PIKWLLNLLY RLCMMIISAV LSIFYFLLNL IWKPIFWGLK VVYRLLGIQK LINKIQSTTF 180
  181 FQKGKGFWKK LWKWIQKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.86
Transmembrane Helix	7	27	0.91
Cytoplasmic	28	42	0.76
Transmembrane Helix	43	62	0.92
Non-Cytoplasmic	63	68	0.87
Transmembrane Helix	69	88	0.94
Cytoplasmic	89	108	0.82
Transmembrane Helix	109	126	0.46
Non-Cytoplasmic	127	127	0.36
Transmembrane Helix	128	152	0.82
Cytoplasmic	153	198	0.56