YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25297777
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHQTKKWFI LVLAMAMVFS MFTPAMTANA AFELEAESAI LVDAESGKIL YGKNIDAVLP  60
   61 TASMTKMMSE YLILEAINEG EISWDQEVPI SDYVRELSLY VQLSNVPLRQ DETYTVKELY 120
  121 ESVAIYSANA STIALAELIA GSESAFVQRM NEKGEELGLE DFKFVNSSGL NNKDLLGNHP 180
  181 EGTDANAENV MSARATAKLA YNLLKDYPEV LETASIPEKT FRAGEGEEIE MENWNWMLKG 240
  241 IRPQHDYEGI DGLKTGYTAE AGNCFTGTAE RNGMRLISVV MRTETRDDRF KETAKLLDYG 300
  301 FNNFTHTEVL PAGFQPAEAQ TLPVSSGKER EVSISTSEPL HAVVRNGEEE LYDPVVTIDE 360
  361 SSLDEDGGLE APVEAGQAVG QITLTYSGDG ETAYLYEDQQ GGTTLVTDAD VERAGWFSLL 420
  421 MRGIGGFFSN VWSAAADTVR GWFS

Type	Start	End	Confidence
Signal Peptide	1	30	0.98
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	444	0.99