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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GPC6A_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLMSFILLW AGLMKVAEAS IAQFSQLGAS APGNIIIGGL FPIHEAVVPV NYTGNNSISA  60
   61 PEHPDCIRFY TKGLNQALAM INAVEMANKS PMLSSLNITL GYRIYDTCSD VTTALRAVHD 120
  121 IMRPFSDCES PEDSSQPVQP IMAVIGTTSS EISIAVARDL NLQMIPQISY ASTATILSDK 180
  181 SRFPAFMRTV PSDEYQTCAM AKLLKSNKWS WVGIIITDGD YGRSALEGFI QHTETEGICI 240
  241 AFKAILPDSL ADQQKLNTDI ENTLNIIENN PKVRVVISFA KSSQMQLLFK GLQSRNISNN 300
  301 MVWVASDNWS TAKHILNDGS ITDIGKVLGF TFKSGNFTSF HQYLKNLQFE SEDEMNNSFL 360
  361 KEFLKLNAGN ASNTVLELMK STNLDKIFSI EMAVTAVANA VAKLCAERQC QDSTALQPWE 420
  421 LLRQLRSITF ENGGEMYKFD ANGDINLGYD LFLWEGDQSD EHADDIIAEY DPTKGGFHYI 480
  481 HNDLSEIKKV VSRCSNSCQP GQYKKTAEGQ HTCCYECLTC VENHYSNITD ADECSPCDSE 540
  541 SMWSLANSTE CHPKVFEYFD WNSGFAIVLL ILAALGVLLL FFMSALFFWQ RHSPVVKAAG 600
  601 GPLCHLILVS LLGSFISVVF FVGEPSDLTC RARQVIFGFS FTLCVSCILV KSLKILLAFE 660
  661 MNFELKELLC MLYKPYMIVS VGMGVQIIIC TVWLTLYKPF KDKEVQTESI LLECNEGFYV 720
  721 MFWLMLGYIA LLALFCFTFA YIGRKLPQKY NEAKFITFSM VICLMAWIIF IPIHVTTSGK 780
  781 YVPAVEMVVI LISNYGILSC HFLPKSYIIL FKKEHNTKDA FMKNVYEYAR KSAENIKGLT 840
  841 GTEPQFKQEN SVYTISNLSF VPEEKHE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle