YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37740
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVLKLGFCL IITLFKSGSI KKTCHELHKT IWQNRLETMK VAVPAVVYAI QNNLYYIALA  60
   61 NVDPTTYSVT LQIRILTTAA LSVCLLNKKL SWYQWGAQVM ALLGVVIVQL DKTNSHKEAV 120
  121 GNFWIGVSAV VGMCWTSAFA GVYFEKMLKN SSADVWIQNI RLSILTLFFA GITMITTDGE 180
  181 AVFGGRMFEG WSNMVWLVTI LNSVGGLCIS LVMKYADNVM KTYCQSIAIG LTSLVSICLG 240
  241 ERILTVYLVY GVTLVTSSVV VYSLFPVAPP ALSDYHKLEQ QDDVAELLKS SGVEDEEEEE 300
  301 DEIFGELEHK IEL

Type	Start	End	Confidence
Cytoplasmic	1	90	0.80
Transmembrane Helix	91	110	0.84
Non-Cytoplasmic	111	122	0.76
Transmembrane Helix	123	144	0.93
Cytoplasmic	145	156	0.87
Transmembrane Helix	157	177	0.84
Non-Cytoplasmic	178	193	0.72
Transmembrane Helix	194	213	0.95
Cytoplasmic	214	221	0.77
Transmembrane Helix	222	240	0.70
Non-Cytoplasmic	241	245	0.42
Transmembrane Helix	246	268	0.77
Cytoplasmic	269	313	0.65