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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: clp-1
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDEEEIIQ KVEVKPDEFN GLIGSIAGNL IRDKVGGAGG DILGGLASNF FGGGGGGGGG  60
   61 GGGGGFGGGN GGFGGGGGGN YGGGGGNQGG GGGGGFNFND IGGLINSMGG GGGGGQRQGG 120
  121 GGGGFGDILG GIGSLIGGGG GGQYNGGGGN VNPNNLNGGM VNVIGNLIGE AAHRFLGVDP 180
  181 GTGRIIGAVA GNVIMGLGGK DNSLGNIGKV ILDNIISGKF RRDVDPFVRP GPDPDRGGGG 240
  241 SGPSPISPRP TTEPQDFYEL RDQCLESKRL FEDPQFLAND SSLFFSKRPP KRVEWLRPGE 300
  301 ITREPQLITE GHSRFDVIQG ELGDCWLLAA AANLTLKDEL FYRVVPPDQS FTENYAGIFH 360
  361 FQFWQYGKWV DVVIDDRLPT SNGELLYMHS ASNNEFWSAL LEKAYAKLFG SYEALKGGTT 420
  421 SEALEDMTGG LTEFIDLKNP PRNLMQMMMR GFEMGSLFGC SIEADPNVWE AKMSNGLVKG 480
  481 HAYSITGCRI VDGPNGQTCI LRIRNPWGNE QEWNGPWSDN SREWRSVPDS VKQDMGLKFD 540
  541 HDGEFWMSFD DFMRNFEKME ICNLGPDVMD EVYQMTGVKA AGMVWAANTH DGAWVRNQTA 600
  601 GGCRNYINTF ANNPQFRVQL TDSDPDDDDE LCTVIFAVLQ KYRRNLKQDG LDNVPIGFAV 660
  661 YDMNNAGNNR GRLSKQFFAA NKSAMRSAAF INLREMTGRF RVPPGNYVVV PSTFEPNEEA 720
  721 EFMLRVYTNG FIESEEL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle