YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDESHKMGFL GATSYVIGNI IGSGIFITPA SILRNVDSIG LSLLIWVLCA VIAILGAICY  60
   61 IELGTSIREA GCDFAYICYV KWYSIAFAFM WVSVLMTYPA TIAICAETFG QYLIEGLKQY 120
  121 YEIDDALVPT CQKLFAYSLL FLVTWMNFFE LSKFAARFQI LATIAKLFSC MLIIGTGFYF 180
  181 YFVKGWHGYL ENPMQGSKYG TGNLILGFYG GLWAFSGWDV LNYSTGEIKH PKRNVPFALL 240
  241 TGISVVTAIY VAINVAYFVV LDVETVKQSD AVAAVPNS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	32	0.88
Non-Cytoplasmic	33	41	0.76
Transmembrane Helix	42	61	0.96
Cytoplasmic	62	81	0.81
Transmembrane Helix	82	102	0.88
Non-Cytoplasmic	103	133	0.83
Transmembrane Helix	134	149	0.94
Cytoplasmic	150	161	0.75
Transmembrane Helix	162	183	0.91
Non-Cytoplasmic	184	200	0.91
Transmembrane Helix	201	222	0.87
Cytoplasmic	223	236	0.84
Transmembrane Helix	237	259	0.89
Non-Cytoplasmic	260	278	0.95