YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	32	0.88
Non-Cytoplasmic	33	41	0.76
Transmembrane Helix	42	61	0.96
Cytoplasmic	62	81	0.81
Transmembrane Helix	82	102	0.88
Non-Cytoplasmic	103	133	0.83
Transmembrane Helix	134	149	0.94
Cytoplasmic	150	161	0.75
Transmembrane Helix	162	183	0.91
Non-Cytoplasmic	184	200	0.91
Transmembrane Helix	201	222	0.87
Cytoplasmic	223	234	0.88
Transmembrane Helix	235	258	0.87
Non-Cytoplasmic	259	286	0.90
Transmembrane Helix	287	307	0.87
Cytoplasmic	308	335	0.85
Transmembrane Helix	336	352	0.88
Non-Cytoplasmic	353	361	0.58
Transmembrane Helix	362	384	0.80
Cytoplasmic	385	392	0.88
Transmembrane Helix	393	414	0.92
Non-Cytoplasmic	415	420	0.77
Transmembrane Helix	421	438	0.98
Cytoplasmic	439	521	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDESHKMGFL GATSYVIGNI IGSGIFITPA SILRNVDSIG LSLLIWVLCA VIAILGAICY  60
   61 IELGTSIREA GCDFAYICYV KWYSIAFAFM WVSVLMTYPA TIAICAETFG QYLIEGLKQY 120
  121 YEIDDALVPT CQKLFAYSLL FLVTWMNFFE LSKFAARFQI LATIAKLFSC MLIIGTGFYF 180
  181 YFVKGWHGYL ENPMQGSKYG TGNLILGFYG GLWAFSGWDV LNYSTGEIKH PKRNVPFALL 240
  241 TGISVVTAIY VAINVAYFVV LDVETVKQSD AVAAIFSRET LGDFANVVPF LIGILLIGSL 300
  301 NSNLFSGSRY MYAAARQGHL PACFSCVNTE TESPRVAVLA QSVLALVISY IGDLDTLITY 360
  361 VMFGFWAQRI FSLVALLIIR HNHIPVHPDA VRVPLFCIYL FLAITVALVI IPIFYEFQST 420
  421 ALAIAICLFG FVLYYVFIHK AIFPRWLVAL NKKVTLWCCI LFDCLPDVKG GVQLLASDSS 480
  481 QALLSERLSS TRLSDDSFPD LHSDEKNIMR RNGSAAGLKM L