YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37721
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.69
Transmembrane Helix	11	38	0.81
Non-Cytoplasmic	39	48	0.53
Transmembrane Helix	49	63	0.52
Cytoplasmic	64	93	0.56
Transmembrane Helix	94	118	0.84
Non-Cytoplasmic	119	128	0.58
Transmembrane Helix	129	155	0.84
Cytoplasmic	156	166	0.62
Transmembrane Helix	167	192	0.74
Non-Cytoplasmic	193	198	0.50
Transmembrane Helix	199	220	0.90
Cytoplasmic	221	229	0.55
Transmembrane Helix	230	251	0.86
Non-Cytoplasmic	252	260	0.41
Transmembrane Helix	261	278	0.44
Cytoplasmic	279	323	0.85
Transmembrane Helix	324	345	0.92
Non-Cytoplasmic	346	361	0.89
Transmembrane Helix	362	385	0.90
Cytoplasmic	386	394	0.90
Transmembrane Helix	395	416	0.91
Non-Cytoplasmic	417	429	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIPAESSY VLFFQVLFPF AVAGLGMVFA GLVLSIVVTW PLFEEIPEIL ILVPALLGLK  60
   61 GNLEMTLASR LSTLANLGHM DSSKQRKDVV IANLALVQVQ ATVVAFLASA FAAALAFIPS 120
  121 GDFDWAHGAL MCASSLATAC SASLVLSLLM VVVIVTSRKY NINPDNVATP IAASLGDLTT 180
  181 LTVLAFFGSV FLKAHNTESW LNVIVIVLFL LLLPFWIKIA NENEGTQETL YNGWTPVIMS 240
  241 MLISSAGGFI LETAVRRYHS LSTYGPVLNG VGGNLAAVQA SRLSTYFHKA GTVGVLPNEW 300
  301 TVSRFTSVQR AFFSKEWDSR SARVLLLLVV PGHICFNFLI QLFTLTSKNN VTPHGPLFTS 360
  361 LYMIAAIIQV VILLFVCQLL VALLWKWKID PDNSVIPYLT ALGDLLGTGL LFIVFLTTDH 420
  421 FDPKELTSS