YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54780952, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.60
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATIGDLVIR FFFMAVLMSP QKSWAIREEH TIIQAEFYLS PDQNGEFMFD FDGDEIFHVD  60
   61 IKKSETIWRL EEFAQFASFE AQGALANIAV DKANLDIMIK RSNNTPDANV IPEVTVLPKS 120
  121 PVNLGEPNIL ICFIDKFSPP AVNVTWLRNG QPVTKGVSET VFLPREDHLF RKFHYLTFLP 180
  181 STEDYYDCEV DHWGLEEPLR KHWEFEEKTL LPETKENVLC VLGLFVGLVG IVVGIVLIIK 240
  241 GLRKRNAVER RQGAL

Type	Start	End	Confidence
Signal Peptide	1	25	0.60
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	218	0.97
Transmembrane Helix	219	242	0.90
Cytoplasmic	243	255	0.96