YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54780922, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSRALILG VLALTTMLSP CGGQDDIEAD HVGSYGITVY QYYESKGQYT HEFDGDERFY  60
   61 VDLDKKETIW RIPEFGQLTS FDPQGALQSI ATIKYNLEIL TKRSNSTSAV NEVPEATVFS 120
  121 KSPVLLGQPN TLICFVDNIF PPVINITWLR NSKPVTEGVY ETSFLSNPDH SFHKMAYLTF 180
  181 IPSNDDIYDC KVEHWGLDEP VLRHWEPEVP APMSELTETV VCALGLSVGL VGIVVGTIFI 240
  241 IKGLRSGGSS RHPGPL

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	219	0.99
Transmembrane Helix	220	241	0.92
Cytoplasmic	242	256	0.90