YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54780916, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSRALILG VLALTTMLSP CGGQDDIEAD HVAAYGINMY QYYESRGQFT HEFDGDEEFY  60
   61 VDLDKKETIW RIPEFGQLTS FDPQGGLQNI AIIKHNLEIL MKRSNSTPAV NKVPEATVFS 120
  121 KSPVLLGQPN TLICFVDNIF PPVINITWLR NSKPVTEGVY ETSFLSNPDH SFHKMAYLTF 180
  181 IPSNDDIYDC KVEHWGLDEP VLKHWEPEVP APMSELTETV VCALGLSVGL VGIVVGTIFI 240
  241 IQGLRSDGPS RHPGPL

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	219	0.99
Transmembrane Helix	220	241	0.88
Cytoplasmic	242	256	0.85