YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54780912
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSRALILG VLALTTMLSP CGGQDDIEAD HVGSYGIEMY QYYKSRGQYT FEFDGDEEFY  60
   61 VDLDKKETIW RIPEFGQLTS FDPQGGLQEM ATAKHNLELL IKRSNSTPAV NEVPEATVFS 120
  121 KSPVLLGQPN TLICFVDNIF PPVINITWLR NSKPVTEGVY ETSFLSNPDH SFHKMSYLTF 180
  181 IPSNDDIYDC KVEHWGLDEP VLRHWEPEIP APMSELTETV VCALGLSVGL VGIVVGTIFI 240
  241 IQGLRSDGSS RHPGPL

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	219	0.99
Transmembrane Helix	220	241	0.90
Cytoplasmic	242	256	0.86