YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54780886
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQTPSFLL PAAVVVLMVL SSPGTEGRDS PRDFVYQFKG QCYYTNGTQR IRGVIRYIYN  60
   61 REEYVRYDSD VGEYRALTQL GRPDAEYYNK QYLEQTRAQV DTVCRHNYEE TEVPTSLRRL 120
  121 EQPNVAISLS RTEALNHHNL LVCSVTDFYP AQIKVRWFRN GREETAGVVS TQLIRNGDWT 180
  181 FQILVMLEMT PQRGEVYICH VDHPSLESPV TVEWRAQSES AQSKMLSGIG GFVLGVIFLG 240
  241 LGLFIRHKRQ KGPRGPPPAG LLQ

Type	Start	End	Confidence
Signal Peptide	1	27	0.97
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	224	0.99
Transmembrane Helix	225	245	0.95
Cytoplasmic	246	263	0.97