YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108705991, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGGRAL PETPTWAVAV VCAVIVLVSV AMEHGLHKLG HWFHKREKKA MGEALEKIKA  60
   61 ELMLLGFISL LLTVAQTPIS KICIPESAAN IMLPCKAGQD IVKGLKGKKD HRRRLLWYTG 120
  121 EEESHRRSLA GAAGEDYCAQ SGKVALMSSG GMHQLHIFIF VLAVFHVTYC VITMALGRLK 180
  181 MKKWKKWELE TNSLEYQFAN DPSRFRFTHQ TSFVKRHLGL SSTPGLRWIV AFFRQFFGSV 240
  241 TKVDYLTMRQ GFINAHLSQN SKFDFHKYIK RSLEDDFKVV VGISLPLWFV AILVLFLDIQ 300
  301 GFGTLIWISF VPLVILMLVG TKLEMVIMEM AQEIQDRATV IKGAPVVEPS NKYFWFNRPD 360
  361 WVLFFIHLIL FQNAFQMAHF VWTLATPGLK KCFHENMGLS IMKVVVGIFI QFLCSYSTFP 420
  421 LYALVTQMGS NMKKTIFEEQ TMKALMNWRK TAREKKKLRD ADEFLAQMSG DTTPSRGSSP 480
  481 VHLLHKQRVR SEDPPSAPAS PGFAGEARDM YPVPVAPVVR PHGFNRMDPD KRRAASSSAI 540
  541 QVDIADSDFS FSVQR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.92
Transmembrane Helix	15	37	0.93
Cytoplasmic	38	57	0.91
Transmembrane Helix	58	79	0.84
Non-Cytoplasmic	80	154	0.97
Transmembrane Helix	155	177	0.94
Cytoplasmic	178	276	0.97
Transmembrane Helix	277	297	0.91
Non-Cytoplasmic	298	303	0.72
Transmembrane Helix	304	323	0.90
Cytoplasmic	324	360	0.90
Transmembrane Helix	361	382	0.88
Non-Cytoplasmic	383	403	0.81
Transmembrane Helix	404	425	0.90
Cytoplasmic	426	555	0.92