YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25308387
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKDITIGQY IPGKSFIHKL DPRTKILLSL VYIVNLFLID KFKGYIFITA FTLFIIFISG  60
   61 IKMKYIYKSL KPILLLIIFT GALNIFMTPG AAAPLFHWSF IHIYKEGLVL AAFMSIRLIF 120
  121 LIIGTSMLTY TTSPIELTDG IEKLLTPFSK IGLPAHEFAM MMTIALRFIP TLIDETDKIM 180
  181 KAQMARGADI DSGNIIKKAK SLIPILVPLF ISSFRRADEL AMAMESRCYR GGEGRTRMKQ 240
  241 LKFTSRDCVA VFFSVVLVGV SVLSNYL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.72
Transmembrane Helix	21	39	0.58
Non-Cytoplasmic	40	44	0.70
Transmembrane Helix	45	66	0.87
Cytoplasmic	67	72	0.82
Transmembrane Helix	73	96	0.89
Non-Cytoplasmic	97	107	0.69
Transmembrane Helix	108	130	0.83
Cytoplasmic	131	242	0.91
Transmembrane Helix	243	264	0.87
Non-Cytoplasmic	265	267	0.79