YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15895253, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.83
Transmembrane Helix	12	35	0.89
Non-Cytoplasmic	36	112	0.78
Transmembrane Helix	113	132	0.93
Cytoplasmic	133	140	0.68
Transmembrane Helix	141	162	0.82
Non-Cytoplasmic	163	168	0.66
Transmembrane Helix	169	186	0.90
Cytoplasmic	187	195	0.76
Transmembrane Helix	196	211	0.76
Non-Cytoplasmic	212	213	0.43
Transmembrane Helix	214	231	0.63
Cytoplasmic	232	235	0.59
Transmembrane Helix	236	256	0.92
Non-Cytoplasmic	257	385	0.66
Transmembrane Helix	386	408	0.86
Cytoplasmic	409	416	0.65
Transmembrane Helix	417	440	0.88
Non-Cytoplasmic	441	453	0.63
Transmembrane Helix	454	477	0.81
Cytoplasmic	478	487	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFVTKITKN HIINTIIIAI AAIILLVSLS INPIIGKHDN GDFGRLMIYG GIDNLSNAYK  60
   61 DIYDGFLHIK YSTNPLNVLL LFYNDWTSCS IPVKISVILF LILHKFTGNL FDIRYLSFVY 120
  121 SILFLMGLYL IINFKKLSTS LKIICGSYMI LFFTSTCYVE YFNSFFEEAG TIVFFLLCIG 180
  181 TYLNLIEKSK PQKRDFVYFF VASAFFLTAK AQNLPMVPFM LIIYLSLYLV YNKKKLILIS 240
  241 SIFVIFLCII SYFSLTKVMN ENNIYQSVFS GVLRDSKTPT KDLTELGLDK KLVVFKGHSF 300
  301 YNKNNGLDPL SNNMLKNFYP NISNWKILFF YLKHQDRMWQ KIVDASNSNY RLDKPYSGNF 360
  361 VKGQYSKNKH LNTFRSYLIS KFPYIHHNVY LFIIFSLIYF TTSVIYAIKS KDVSIKLLNL 420
  421 MLIFILITGS SQFILPVIGA GHGDFSKHLF LLNFSYDIMF GVALLWFSHI ISNIFLFHKH 480
  481 NNYFTNK