YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15024829, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRYTKGVSK KKGLKPGSLI HVGNSTGKKT EIHIIDYKDD YFEEKDVHSI DECLKYRDTD  60
   61 NMTWININGL EDIDLYEKVG KYFGVHSLIM EDILNTNQRP KIEEFEKYIF IVLKMIYFRE 120
  121 DKLVVEQVSI ICMENLIITF QEEGKDGDVF GNLRDRIRNT KSKIRKTGVG YLTYALIDSI 180
  181 VDNYFVILEK VEDKIENFEE SLMTTATNNL FNEVYNLKRQ MIFLWKAVWP LREIINTLQR 240
  241 GEVEIIGSDI SIYFKDVYDH TVQVIDTIEL FRDMIAGLLD TYLSSASNKM NEIMKFLTIF 300
  301 STIFIPLSFL VGVYGMNFDY MPELKFRYGY AVLWVIMISL SAFMLMYFRK KKWL

Type	Start	End	Confidence
Cytoplasmic	1	295	0.98
Transmembrane Helix	296	316	0.94
Non-Cytoplasmic	317	327	0.84
Transmembrane Helix	328	348	0.94
Cytoplasmic	349	354	0.93