YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15024362, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNLLNIVII LLLVFMNAFF VAAEFSMVKI RKSRIETLVL DGDKNAKYAL GVINNLNSYL  60
   61 SACQLGITLA SLGLGWVGEP AVSKMLSPLF NLLKIPKQII GSISVVVGFI IITGFHIVLG 120
  121 ELAPKSVAIL NTESIAKATA IPLTLFYKFT YPIIVAFNKS TDLVLKLFGI KQVDEHEEAH 180
  181 TDEEIRMLVE ESYKHGLIDK TELTFVDNVF DFSEKTVKEI MVPRTDMKCI FVEDSFDDIV 240
  241 GVTIDEHFTR YPVCEESKDN IIGLIHIKDL YKLKINKEDE KIESIIREIK FVPESMSISE 300
  301 LFRMFQKERM QMAIVIDEYG GTFGLVTIED ILEEIVGEIQ DEFDEEMEEI IKTENGSYVV 360
  361 DGKVLIEDIN ELLDIEIYEE NIDTIGGWIY SKLKKYPKTN EKINYGNYQF IILKCDRRRI 420
  421 EKILIKNL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.62
Transmembrane Helix	7	28	0.90
Cytoplasmic	29	98	0.49
Transmembrane Helix	99	120	0.93
Non-Cytoplasmic	121	428	0.63