YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15894686, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.96
Transmembrane Helix	100	121	0.79
Non-Cytoplasmic	122	140	0.70
Transmembrane Helix	141	161	0.91
Cytoplasmic	162	170	0.77
Transmembrane Helix	171	191	0.91
Non-Cytoplasmic	192	211	0.77
Transmembrane Helix	212	235	0.86
Cytoplasmic	236	252	0.84
Transmembrane Helix	253	275	0.90
Non-Cytoplasmic	276	295	0.66
Transmembrane Helix	296	319	0.85
Cytoplasmic	320	333	0.62
Transmembrane Helix	334	354	0.92
Non-Cytoplasmic	355	362	0.66
Transmembrane Helix	363	384	0.90
Cytoplasmic	385	391	0.66
Transmembrane Helix	392	416	0.84
Non-Cytoplasmic	417	435	0.65
Transmembrane Helix	436	460	0.89
Cytoplasmic	461	628	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYEKLAKDI IENVGGKENV NSLTHCITRL RFKLKDESKA NTDVLKNMDG VVTVIKSGGQ  60
   61 YQVVIGNHVP DVYADVVAIG GFSSSSEEGT KEKTNLFNAF IDTISGVFTP TLGVLAATGM 120
  121 IKGFNAMFIA FGWLTKTSGT YNILNAVGDC LFYFFPIFLG YSAAKKFKGN HFIGMAIGAS 180
  181 LVYPTLSTLM TGKPLYTLFQ GTIFASPVYV TFLGIPVILM SYSSTVIPII LASYVGVKVE 240
  241 KAFAKIIPDV VKTFLVPFCT LLVMVPLSLI VIGPISTWAG KLLGAGTLAI YNLSPILAGL 300
  301 FIGAFWQVFV IFGLHWGLVP IAMNNLSVLH YDPILAGTLG ASFAQTGVVL AILIKTKNVK 360
  361 LKGIALPAFI SGIFGVTEPA IYGVTLPRKK PFIISCIGAA IGGGITGFMG TKLWMMGGLG 420
  421 IFAIPSYIGA KGMDRGFYGA VMSVVISFVV GFLIMFFAGF KDEEVKQETT KKKNELVKQE 480
  481 TLVSPLKGKI KTLSEVKDEA FSTGSLGKGI AIEPEEGKLV SPVDGVLATL FPTGHAVGII 540
  541 SDKGTEILIH VGMDTVQLEG KYFKTILKQG DHVKAGDTIL EFDIPKIKKA GYTLTTPVVV 600
  601 TNSESYLDVI ETDKIKVERK DQLLTVML