YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25499786
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPKKLVDSF NHALEGIIYA VRTQQNVRID LIAALVILTM CFFTNLTRVE LLIITITITM  60
   61 VISAELMNTA IEATIDLTSN YYHPLAKIAK DVAAGAVVVT AINAVIVGFI VFWDKLEPVT 120
  121 NHVIYKIKNS NPYMIFVILV IVCILTLIIK AIFGEGTPLR GGMPSGHSTI AFSLATIITL 180
  181 ISPQPVVIIL SYFLAVIVAQ SRVDSKVHSS LEVVCGAVFG FLATLLLFKL FH

Type	Start	End	Confidence
Cytoplasmic	1	30	0.67
Transmembrane Helix	31	64	0.67
Non-Cytoplasmic	65	91	0.67
Transmembrane Helix	92	113	0.96
Cytoplasmic	114	132	0.79
Transmembrane Helix	133	154	0.94
Non-Cytoplasmic	155	170	0.78
Transmembrane Helix	171	196	0.87
Cytoplasmic	197	207	0.72
Transmembrane Helix	208	228	0.92
Non-Cytoplasmic	229	232	0.57