YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15023717, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKNLFSKAK ISLLTFAFLG TSLSGAYSAC AATVNPHDMT SQQIVNDMKV GWNLGNTLDA  60
   61 SPDETGWGNP KTTKAMIDKI KEAGFNTVRI PVSWSSHIGA GPSYTIDQAW LNRVQEVVNY 120
  121 VIQDHMYAIL NTHHDTSWII PTYNKEAAST DELTKVWGQI ANRFKDYDSH LIFETLNEPR 180
  181 IVGSPEEWNG GTAESRDVIN KFNLTAVNTI RSTGSNNSSR FIMVPTYAAS TATAAMNDLV 240
  241 IPNNDKRVIV SLHMYAPYSF AMDPKGTSHW GGEADKDALD GQLNAIYNKF VKNGQPVVIG 300
  301 EFGSINKNNE SSRASLAKFY VSDARKKGIT TVWWDNGKSA VGDDNYGILD RNNLTWVFPK 360
  361 LVRTIVNSAR

Type	Start	End	Confidence
Signal Peptide	1	31	0.95
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	370	0.99