YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15893714, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.97
Transmembrane Helix	109	133	0.85
Non-Cytoplasmic	134	144	0.82
Transmembrane Helix	145	166	0.90
Cytoplasmic	167	173	0.80
Transmembrane Helix	174	192	0.69
Non-Cytoplasmic	193	209	0.64
Transmembrane Helix	210	233	0.83
Cytoplasmic	234	247	0.67
Transmembrane Helix	248	270	0.88
Non-Cytoplasmic	271	288	0.66
Transmembrane Helix	289	310	0.89
Cytoplasmic	311	330	0.62
Transmembrane Helix	331	351	0.71
Non-Cytoplasmic	352	359	0.42
Transmembrane Helix	360	383	0.81
Cytoplasmic	384	388	0.40
Transmembrane Helix	389	406	0.74
Non-Cytoplasmic	407	407	0.04
Transmembrane Helix	408	422	0.55
Cytoplasmic	423	428	0.48
Transmembrane Helix	429	452	0.90
Non-Cytoplasmic	453	627	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYNKTAKDI LKLLGGEKNV MSAAHCATRL RLVLKNEKEA RTKEIEKLDG VKGVFSSSGQ  60
   61 YQIIIGQGSV NKVYKAFVEG TGISESSLSD TKKAAMKNMN LFERFARMLS NIFVPIIPAI 120
  121 VASGLLMGLL GMLDAFHLVN SKSGLYVILN MFSNAAFQFL PMIIAFSAAR EFKTNPYLAA 180
  181 ALGAIMIHPD LQNAWTLGEG IKHTINIFGL NIGMVGYQGT VLPILISVWV MSYIEKGLRK 240
  241 IVPEALDILL TPFLTLMITG FFAMVVIGPG GRFVGDEISL GLQTLYNTTG FFSGVLFGGL 300
  301 YSLIVITGIH HSFHAIEAGL LANPAIHKNF LLPIWSMANV AQGGAALAVY FKTRDKKMKS 360
  361 IAAPASFSCL LGITEPAIFG VNLRYTKPFI AGALGGAIGG GYIVFTKVAM TAVGVTGIPG 420
  421 IAIVKQGSFL NYIIAMILAF GGAFIIAMVL GIKEEITEED LNKETVNKDI KVEEVESVVS 480
  481 PVNGKVVLLK NVPDKTFAEG LIGDGIGVDP EDGEVVSPID GTVVHVFETK HAIAMKSKNG 540
  541 VEMLIHIGID TVKMEGNGFK SFINDGEEVK KGDKLIQFDL DLVKEKAVSP IVLTIVTNHE 600
  601 DMGFVNSEKI DGKQLRQKDE ILKIGIK