YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25296327
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSVKKIMA VILTAVIGVG LLAGCSSTGS SSNDESLSKV KKAGVLKVGL SDDYPPMEFR  60
   61 DSNNKVSGFD IDMINAIGKK MGVKVQIVTN SFDGIFVALK AKKFDMVQSC VSITDERKST 120
  121 LLFSDPYIYG GVAVFVKKSN TTIKKPEDLK GKVVGCQAGT TAEDALKKFN GLKETKKYQQ 180
  181 TTDAFLDLEN NRIEAVVADP MVGDYYTTKN PGKYEKISKY LGKEPVGAAF RKQDKTLKDA 240
  241 YQKAYNELKK DGTLSKLSNK WFGYDIYSSQ NK

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	272	0.99