YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15893645, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.79
Transmembrane Helix	11	30	0.88
Non-Cytoplasmic	31	112	0.98
Transmembrane Helix	113	132	0.97
Cytoplasmic	133	143	0.95
Transmembrane Helix	144	168	0.89
Non-Cytoplasmic	169	221	0.87
Transmembrane Helix	222	241	0.77
Cytoplasmic	242	253	0.73
Transmembrane Helix	254	276	0.75
Non-Cytoplasmic	277	300	0.72
Transmembrane Helix	301	325	0.86
Cytoplasmic	326	332	0.88
Transmembrane Helix	333	354	0.90
Non-Cytoplasmic	355	401	0.88
Transmembrane Helix	402	422	0.92
Cytoplasmic	423	427	0.84
Transmembrane Helix	428	446	0.82
Non-Cytoplasmic	447	451	0.61
Transmembrane Helix	452	467	0.74
Cytoplasmic	468	471	0.80
Transmembrane Helix	472	492	0.86
Non-Cytoplasmic	493	502	0.78
Transmembrane Helix	503	524	0.88
Cytoplasmic	525	544	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLKKNWTK FILSFIMLVL AIICVYTLST YKSSEKNTGF LKMGGGFNKS FNSSSRKLNG  60
   61 QPNMKGAPAQ HPSNSNANSK SAPPNNFNHN VSKPQRMMGG GEFNSSSKYS SEVLIYSLGF 120
  121 FAIVICAYLA IVKKKIKIST ENRGFILAAF LVIGFLFRII VGLLITGYVT DIGLYKQWAL 180
  181 TAAKNLAAVY TNGSVDYPPV YLYVLSIIGK IASSSFMSNY STLLIKLPSI IADIFSAYFV 240
  241 YRLSIKRFSY ETSFALTLFY LFNPAILINS TLWGQADSFF TLLVILAVYF ISEDKIVPSS 300
  301 IFFALSVLMK PQGIIFLPLV LFWYIKNKNL KSIFKSIASG FITTIIVLAP FSISKGNITW 360
  361 IFDLYTREVS EYPYASNNAF NFYSLIGANR VKDSNTMFIF SYHTWGMLFI VLITLISGFF 420
  421 YLKSKNKYAS TLAALIQVVG VFNFSVGMHE RYMFTAVLAS ILAYIYFKDK RLLLISLLLS 480
  481 FINYANMHTI LFNRLNMNVN SSSSMLIVFI SLLNITTFVY LIKVCFDLCL KKDIKVTEDI 540
  541 QNTL