YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15023068, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.67
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.65
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	135	0.75
Transmembrane Helix	136	160	0.88
Cytoplasmic	161	172	0.69
Transmembrane Helix	173	194	0.79
Non-Cytoplasmic	195	206	0.69
Transmembrane Helix	207	232	0.86
Cytoplasmic	233	245	0.77
Transmembrane Helix	246	268	0.91
Non-Cytoplasmic	269	284	0.73
Transmembrane Helix	285	304	0.91
Cytoplasmic	305	314	0.62
Transmembrane Helix	315	339	0.78
Non-Cytoplasmic	340	364	0.71
Transmembrane Helix	365	384	0.82
Cytoplasmic	385	392	0.69
Transmembrane Helix	393	413	0.83
Non-Cytoplasmic	414	429	0.75
Transmembrane Helix	430	451	0.93
Cytoplasmic	452	458	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLVAITSC PTGIAHTYMA AEALQMAAEE MGHKIKVETQ GSVGAENVIT TSDVNDADAV  60
   61 IIAADTNVDK SRFAGKVLIE VPVKDAIKDP KGLINTALSS NKIYGNSNEK SKVEEKREDK 120
  121 GRASGVYKHL MTGVSFMIPF VVAGGILIAL GFAIGGIYVF KTPGTIGETI FSTGKQAFAL 180
  181 MLPVLAGYIS FSIADRPGLV PGFVGGALAS TIGAGFIGAL LAGFIAGYFV VLLKKYIKLP 240
  241 KALDSLMPVL IIPVLSTLFI ALVMMFILGD PVKAINNGLT GFLKGLSGAN AAVLGIVLGC 300
  301 MMAFDMGGPF NKAAYVFATG TITTTGTTIM AATMAAGMVP PLAIALATVI GKKKFNEQER 360
  361 EAGKAAWALG LSFITEGAIP FAAADPLRVI PSMMAGSAVT GALSMIFGSR LAVPHGGVWV 420
  421 LFIPHVVTNL GGYIISILVG MVVSALLLVA LKKDIVRK