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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25501285
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLKSRKKL IAIAVGVTVI MSSATALGIS TFANSNNNAA ISLAGSSGSG DFSDIVLSPG  60
   61 SDPSELNFNW YSNNSNATPT VEVALKSDAN DSDFPANKCS TFTGKTSQGN LNFTSNKVSV 120
  121 SGLKPSSQYV YRLGDGSNWS STYTFTTHDT SQYSFLFAGD PQIGASGDIA SDGAGWKSSL 180
  181 DKMTGTFSDT SFLISLGDQV NNGKELNGQS NETEYSQYFA PDEFKSLPVA SIAGNHETYG 240
  241 VGHNTHFNAP NLSNTYGAFS SAPTTGTDYY FTYGNTLYLM LNSNDMNEAE HEAFIKDAIS 300
  301 KNPNVTWKVA VLHHSVYSSA DHETDTDIIQ RRSDLPPIFD EFGIDVVLDG HDHCYTRSYQ 360
  361 MKGGQALKDQ TVDKDGRIIN PKGTLYITAN SASGSKYYEM KEPNQNNYYE AKKEQLHEPT 420
  421 VSRVSVTSNS FKIDTYRTDT MTQTDSYTLV KSSAPAPDTQ SVINSINNLP DPTSISLNDD 480
  481 ANVQNALNAY NSLTPDQKQL VSNADKLTQD INKIQALKAS AANSQAANDV ISKINTIPNN 540
  541 VTLNDEGAIT TARAAYNALT DPQKALVTNY SKLTDAETAL AKLKAPADTN TNNTNSSTPN 600
  601 SSNSTSSNQT LSSLPKTGEF FDATMLLSIA LICLASGAIL IFVNKKKSSP TK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle