YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25498023
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.99
Transmembrane Helix	7	30	0.89
Non-Cytoplasmic	31	46	0.89
Transmembrane Helix	47	67	0.91
Cytoplasmic	68	74	0.93
Transmembrane Helix	75	98	0.89
Non-Cytoplasmic	99	103	0.64
Transmembrane Helix	104	125	0.87
Cytoplasmic	126	131	0.85
Transmembrane Helix	132	153	0.91
Non-Cytoplasmic	154	163	0.73
Transmembrane Helix	164	184	0.93
Cytoplasmic	185	194	0.89
Transmembrane Helix	195	215	0.94
Non-Cytoplasmic	216	222	0.83
Transmembrane Helix	223	244	0.93
Cytoplasmic	245	262	0.91
Transmembrane Helix	263	284	0.91
Non-Cytoplasmic	285	298	0.77
Transmembrane Helix	299	320	0.92
Cytoplasmic	321	327	0.88
Transmembrane Helix	328	347	0.95
Non-Cytoplasmic	348	354	0.84
Transmembrane Helix	355	376	0.90
Cytoplasmic	377	392	0.75
Transmembrane Helix	393	412	0.84
Non-Cytoplasmic	413	853	0.95
Transmembrane Helix	854	870	0.63
Cytoplasmic	871	879	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNERKKYIGF IGILIAAFLG VIDSTIVNIA LPNITDYFKV SLNDTSWIST IYALALAVFM  60
   61 ITAAKFADQF GRKKLMIIGI LIFGVSSALC GISNSLLFLI IMRFVQGIGG AIITPIALPM 120
  121 GIEIFGKERM NIVVGASGAV VGLAAASGPP LGGVLIKYIN WQSVFFVNVP FAIAALILIV 180
  181 ICVNESYDNT VSKDIDWFGV MTLTISLFCL IFALLKGKDY GWTSTLIISL FLIFVVSLIL 240
  241 FIIIELKVSS PMIEINLFKE PTFTASSICY MITGFGLMCP LLILNYYLQN VLQYDTLEAA 300
  301 FIMMSVSLTG MFSTPIGSIL GKKVSPRIIN FIGMLSLGIG IFRLSYLSYG MSKGTMIFDL 360
  361 IICGIGLGFS VQALSSSVKF IPKEKSGIGS GIVNAARQIG SCIGIAILVS MLNSNVSDAK 420
  421 DNIKKDVVSY INNKKEIIYP VRKELVKIVN DKFNKSDNNL SNKSTMSQSS ITNDVKEILK 480
  481 RNSSVFSNRA SFEDNDTLEQ LYNATKKLSD GSEKSYQGQV VLNNGIGALD SGINSIYNGS 540
  541 SALTSGMGSL NNGLNRAFLG SQKLKEGSAG LSTLVNGISQ LNDGSKKLSA QFSHSQDENT 600
  601 PTIYDGIYGV NDGAQKLSSG VTTYVSSVDS TIYMMAKNTP NAANVLESYK AELIKAKAKN 660
  661 DIQSEEMLQN LIAIYSAAID SSTTNLADFK NRLNENKNIV SSGEEVKQGA EKVSGGTSKV 720
  721 LGQFEDGGSF KTGVLALSEG IGKMSNSSSG LIKFQDGIGS LSDALYKLSR GGSKVYDGSE 780
  781 KLSSGIKASL AGGDKLKEGS GKILEASSKL KSGTNKIVES EGMAGQKESL SKVINKIKDE 840
  841 KNDKISEAFN KTNLIAAIVL MICSLLGLFT DKREKKVEA