YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15966231
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSQVKTTT NDVSRREILA GAIGAATATA AAALSAASPA VAGGAEPPAG AATPGATGSR  60
   61 IITRDGVEIY YKDWGPKGGP VVILSHGWPL SSDSWEAQAF YLANNGFRVV THDRRGHGRS 120
  121 SQPWDGNDMD HYADDLADLI ETLDLKDIFL AGFSTGGGEV ARYIGRHGTA RVAKAGLISA 180
  181 VPPLMVKTDD NPGGLPKEVF DGLQAASLAD RSQLYRDIAS GPFFGFNRPG AKPSQGMIDS 240
  241 FWLQGMTAGH KNAYDSIVAF SQTDFTEDLK KFDVPTLIIH GDDDQVVPID AAARASKKLV 300
  301 PQAELKVYPG APHGITDTHK DQLNKDLLDF ARS

Type	Start	End	Confidence
Signal Peptide	1	42	0.94
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	333	0.99