YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15964875
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPRHEQSA GIPEAAEHVG ATGTHDKARG PRLREIPLRL MVPNMITVLA ICAGLSGVRL  60
   61 AFENRFELAV AMVLLAAFLD GIDGRIARLL KATSSFGVQM DSLADIINFG VAPALVLYVF 120
  121 LLDQARSLGW IAALIYAIAV GLRLARFNVM AERQVKASWQ SEYFVGVPAP AGAMLVLLPV 180
  181 YLGLLGLAPE RTFALIASVY TVLIAFLMVS RLPVWSGKSE NRVRRDLVLP VILVVVFYVA 240
  241 TLMTYTWETM VVTAVAYLVS LPFGARSWQR KYGDWPGGHG NDGLPGDSE

Type	Start	End	Confidence
Cytoplasmic	1	39	0.96
Transmembrane Helix	40	61	0.91
Non-Cytoplasmic	62	67	0.77
Transmembrane Helix	68	87	0.90
Cytoplasmic	88	101	0.87
Transmembrane Helix	102	122	0.90
Non-Cytoplasmic	123	127	0.87
Transmembrane Helix	128	147	0.93
Cytoplasmic	148	162	0.92
Transmembrane Helix	163	185	0.92
Non-Cytoplasmic	186	192	0.83
Transmembrane Helix	193	215	0.91
Cytoplasmic	216	226	0.86
Transmembrane Helix	227	245	0.90
Non-Cytoplasmic	246	249	0.62
Transmembrane Helix	250	268	0.67
Cytoplasmic	269	289	0.68