YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15073958
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	33	0.94
Non-Cytoplasmic	34	40	0.95
Transmembrane Helix	41	63	0.90
Cytoplasmic	64	73	0.94
Transmembrane Helix	74	94	0.94
Non-Cytoplasmic	95	101	0.80
Transmembrane Helix	102	121	0.95
Cytoplasmic	122	128	0.76
Transmembrane Helix	129	148	0.93
Non-Cytoplasmic	149	159	0.80
Transmembrane Helix	160	180	0.94
Cytoplasmic	181	190	0.87
Transmembrane Helix	191	211	0.94
Non-Cytoplasmic	212	218	0.73
Transmembrane Helix	219	238	0.96
Cytoplasmic	239	248	0.85
Transmembrane Helix	249	268	0.94
Non-Cytoplasmic	269	273	0.83
Transmembrane Helix	274	292	0.96
Cytoplasmic	293	312	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDADDASPMK GIVLKVLSVV VFVCMSTCIK AAGDDIPTGQ ITFYRSAFAM VPILGFLACR  60
   61 GALRDAFRTT DITGHLVRGF VGILAMSCGF YGLVHLPLPE AIAIGYAMPL LAVAFAAIFL 120
  121 GEIVRLYRWS AVFVGLAGVF IITWPRLTLF NEGGFGSAEA MGAVAVLLSA ALGATAMVLV 180
  181 RKLVQKERTH TIVLYFSLSA AVFSLATLPF GWSELSWQAF VLLTIAGFCG GVGQILLTES 240
  241 YRHADMSTIA PFEYTSIVLG IVIGYFLFGD VPTATMLAGT AIVVGAGIFI IYREHRLGLE 300
  301 RKGARKHVTP QG