YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15964664
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPRSRAGR AAGVVLVLAA FAVLVSLGTW QMQRLHWKEA LIGAIAERRS APAVSFDKIE  60
   61 AMAAAGGDID YRTVYVSGVY DHGKERHFFA THEGRTGFYV FTPLMLADGR AIFVNRGFVP 120
  121 FEKKDASTRA EGQIAGSVTI NGLARPKLSG KPSSLVPDND AAKNIFYWKD LDTMADSAGL 180
  181 ASDRVVSFFI DADASDNPGG LPIGGVTQFD LPNNHLQYAL TWYGLAAALV AVSGIYIYRR 240
  241 RR

Type	Start	End	Confidence
Signal Peptide	1	28	0.88
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	217	0.99
Transmembrane Helix	218	238	0.95
Cytoplasmic	239	242	0.89