YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15964109
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKRRLGIG LIGTGFMGKA HALGFTIAAR VFDLPFELDL VSVADVTQEG AEAARGRLGF  60
   61 RKATADWREL LTDPEIDIID ITTPNLLHKE MALAAFAHGK HVYCEKPLAP TVADCAEMVA 120
  121 AAEKAGVVTQ VGFNYLKNPL IFLASDIIES GEIGEIRSFR GIHAEDFMAD ESVPWGWRLD 180
  181 PRSGGGALAD IGSHMIACMR HLVGPIRSVL AETVIHIPQR PVARGATATR TVEVDDVTRA 240
  241 FVRFESGASG SFEASWIATG RKMQHDFEIY GSKGSIVFTQ ERLNEIRVYY AGDDIRSRGF 300
  301 RTIWAGPEHP PYGAFCVAPG HQIGFNELKA IEANEFLEAI AKGSKTSTDF REGYEVQKVL 360
  361 SATYHSARTN EWVEIG

Type	Start	End	Confidence
Signal Peptide	1	22	0.89
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	376	0.99