YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15964027
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.29
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKKCAILAV VAVYLSGCTT TDPYTGEQKM SNTAGGALIG AGLGAATGLL VGGSAAGRRD  60
   61 AALVGAGIGA LGGGLVGNYM DQQESELRAQ LQGTGVSVTR AGDRIILNMP SNITFATDRD 120
  121 QVIPAFYSTL DSVAIVLRKF NKTLIDVDGH TDSTGSASYN QGLSERRAAS VANYLASRGV 180
  181 DQRRMSAVGY GLERPIASNA TEVGRAQNRR VEISIAPIKQ G

Type	Start	End	Confidence
Signal Peptide	1	20	0.59
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	33	0.80
Transmembrane Helix	34	53	0.65
Cytoplasmic	54	60	0.52
Transmembrane Helix	61	80	0.61
Non-Cytoplasmic	81	221	0.90