YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55669120
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLGKPLNY NRGTRRDVRY RRLQSRLYNF LERPRGLHAI FYHVMVFLMV FTCLALSVFS  60
   61 TIKEYEEDAV YILFRMEILV VIWFTMEFGA RLWSSGCRSR YQGCLGRLKF VKRPFCIIDI 120
  121 VTILASIVVL GMGTSGQVFA TSALRGLRFF QILRMVRMDR RGGTWKLLGS VVYAHRQELI 180
  181 TTVYIGFLGL IFASFLVYMW EKDVNDKFSN FAQALWWGVI TLCTVGYGDM VPITWQGKLI 240
  241 ASCCALLGIS FFALPAGILG SGFALKVQQQ QRQKHMIRRR QPAATLIQAV WRCYAADEHS 300
  301 VSVATWNIHR VALPSPPASR ASSSFKHNTS FVARLPTIRR HKSQTIQTPG GGDGGGVSKP 360
  361 PGSSRASTRY TRTIRDINAS VENLDEEDEP RCTQLTNRHK TAIRFIRKLK YFVARRKFKE 420
  421 ALKPYDVKDV MEQYAAGHVD LLGRVKMLHL RLDQILGKQG SKAKDVYASK ISLASRVVKV 480
  481 ERQVADIEEK LDILIKAYME DRDRFLALLL PAKPKIHSIS PSHKPLHHAH NLAMIDVWKR 540
  541 TAALSVHPEQ VTTTPLLNPS APDSSELRSL TATQTPTTTT DAIATQTLMP PHVQHTATNT 600
  601 KYKHPKTCSL HRSTSEPYSK QEQRITIPDE GADSLDSSAK PTPPDSSSN

Type	Start	End	Confidence
Cytoplasmic	1	38	0.96
Transmembrane Helix	39	62	0.90
Non-Cytoplasmic	63	70	0.89
Transmembrane Helix	71	94	0.86
Cytoplasmic	95	114	0.86
Transmembrane Helix	115	133	0.92
Non-Cytoplasmic	134	137	0.61
Transmembrane Helix	138	158	0.63
Cytoplasmic	159	178	0.70
Transmembrane Helix	179	200	0.92
Non-Cytoplasmic	201	212	0.66
Transmembrane Helix	213	233	0.86
Cytoplasmic	234	242	0.57
Transmembrane Helix	243	265	0.91
Non-Cytoplasmic	266	649	0.79