YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25502852
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	244	0.99
Transmembrane Helix	245	268	0.88
Cytoplasmic	269	274	0.61
Transmembrane Helix	275	294	0.75
Non-Cytoplasmic	295	303	0.66
Transmembrane Helix	304	324	0.91
Cytoplasmic	325	339	0.60
Transmembrane Helix	340	359	0.71
Non-Cytoplasmic	360	383	0.85
Transmembrane Helix	384	404	0.93
Cytoplasmic	405	429	0.87
Transmembrane Helix	430	452	0.90
Non-Cytoplasmic	453	470	0.76
Transmembrane Helix	471	492	0.86
Cytoplasmic	493	501	0.64
Transmembrane Helix	502	520	0.93
Non-Cytoplasmic	521	537	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRIIPTVLA ALFLFVAMAP GLRAEEGLRD LVNALGEAKL SEMDEHIAAL AKTGKPEVVA  60
   61 ILEALGEGEL YARKADGQVL LTKESGSNLT LTDPISGDSA GEAPKAALSK IRVNNSVRRA 120
  121 VRTALGSLTL LSPDRNQRLR AAQSVLQSPD ADALGVIENA LAAEKDGAVR AVLEQARATM 180
  181 LLLSDRPVEE KKEAVRLLEE NGGREALPIL SAALGSADES LKPDIEAALA SIEQAQAFWN 240
  241 AGQNIWYGLS LGSVLLLAAI GLAITFGVMG IINMAHGEMV MLGAYTTFLV QDVVRTSFPH 300
  301 LFEWSLAIAL PLAFLVTGAV GLALERGVIR FLYGRPLETL LATWGISLIL QQTVRTIFGP 360
  361 TNREVGNPSW MSGAFELGGL AITWNRLWII VFALAVFAAL LFLLKKTPMG LQMRAVTQNR 420
  421 RMASSMGIRT PWVDALTFAL GSGIAGIAGV ALSQIDNVSP NLGQGYIIDS FMVVVFGGVG 480
  481 NLWGTLVGAF SLGILNKFLE PYAGAVLGKI LVLVLIILFI QKRPRGLFAL KGRAVEA