YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33417172, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIIRSAPQ GCNNGALMDH FGVLIQGVLA VVAFSTLMLK RCREPKEERR PWKIWFYDTS  60
   61 KQAIGALFIH FTNVFLSDLT EKDPCSLYLM NFLLDATLGM LVIWICVKIV SVIVERRQST 120
  121 LLVFGEYGDP PQAAAWLGQC VLYLVIMVVE KTVITLVLLF PGWTKLQAIL LNYIPNPQLE 180
  181 LVLVMLVVPF IVNAIMFWVV DSLIMRKYKK MKRDKSLETT SSSNSPTYDD ESQVLLGSAS 240
  241 DHYRSYE

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.91
Transmembrane Helix	20	39	0.93
Cytoplasmic	40	53	0.92
Transmembrane Helix	54	76	0.80
Non-Cytoplasmic	77	91	0.76
Transmembrane Helix	92	112	0.88
Cytoplasmic	113	139	0.88
Transmembrane Helix	140	160	0.86
Non-Cytoplasmic	161	180	0.85
Transmembrane Helix	181	203	0.92
Cytoplasmic	204	247	0.98