YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27696870, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLWGFLKTQ FVVHLLIGFV FVVSGLIINF LQLCTLPLWG INKPLYRRIN CRMAYLLWSQ  60
   61 LVMLLEWWSG TQCTLFSDQK TIDHFGKEHV IIILNHNYEI DFLCGWTMCE RYGVLGGSKV 120
  121 LAKKELLMVP LIGWTWYFLE IVFCKRKWEE DRDTVIQGLK DLRDYPEYMW FLLYCEGTRF 180
  181 TETKHKISME VADKKGLARL KHHLLPRTRG FTTAVQCLRG TVSAVYDVTL SFRGNKNPSL 240
  241 LGILYGKKYE ADMCVRRFPL EEIPEDEKEA AAWLHKLYQE KDALQEQYIQ EGTFPGTQIV 300
  301 PPRRPWTLLN FLFWATLLLS PLFSFAIGIF ASGSPLLILS FMGFMWTASF AVRRLIGVTE 360
  361 IDRGSSYGNH EVKKSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.80
Transmembrane Helix	12	36	0.86
Cytoplasmic	37	53	0.68
Transmembrane Helix	54	70	0.58
Non-Cytoplasmic	71	124	0.51
Transmembrane Helix	125	139	0.40
Cytoplasmic	140	307	0.88
Transmembrane Helix	308	330	0.86
Non-Cytoplasmic	331	335	0.66
Transmembrane Helix	336	357	0.83
Cytoplasmic	358	376	0.93