YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147902276, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCKPLSSG QECALSKSSS SSRGEADDLE LAELGPLLKA GRDKIGQTSS CGDENQAGKV  60
   61 SQEEEEEEEV RVLTLPLQAH HAMEKMEEFV YKVWEGRWRV IPYDVLPDWL KDNDYLLHGH 120
  121 RPPMPSFRAC FRSIFRIHTE TGNIWTHLLG FVLFLLLGVL TMLRPNMYFM APLQEKVVFG 180
  181 MFFLGAILCL SFSWLFHTVY CHSEKVSRTF SKLDYSGIAL LIMGSFVPWL YYAFYCSPQP 240
  241 RLIYLSIVCV LGITAIVVAQ WDRFATPKHR PTRAGVFLGL GLSGIVPTLH FTIAEGFVKA 300
  301 TTVGQMGWFF LMAVMYITGA GLYAARIPER FFPGKFDIWF QSHQIFHVLV VAAAFIHLYG 360
  361 ISNLQEFRYA LEGGCTDDSL L

Type	Start	End	Confidence
Cytoplasmic	1	142	0.99
Transmembrane Helix	143	163	0.93
Non-Cytoplasmic	164	177	0.88
Transmembrane Helix	178	200	0.90
Cytoplasmic	201	212	0.91
Transmembrane Helix	213	234	0.90
Non-Cytoplasmic	235	241	0.85
Transmembrane Helix	242	261	0.96
Cytoplasmic	262	273	0.83
Transmembrane Helix	274	294	0.94
Non-Cytoplasmic	295	305	0.82
Transmembrane Helix	306	325	0.95
Cytoplasmic	326	342	0.83
Transmembrane Helix	343	361	0.92
Non-Cytoplasmic	362	381	0.95