YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148229286, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCCVCDITL LLAALAALLI ILLLIVAHVT AKKMPNLHRL EEEKYFTDSK GKTEPFPSIH  60
   61 DPPTKDLSVV VPSYNEEERL PVMMDEAMEY LEQRQKKQPS FSYEVIVVDD GSRDKTTEVA 120
  121 LRYCKKYSSD KVRVLTLKKN RGKGGAVRMG VLVARGKLIL MADADGATKF ADIKNVEVGL 180
  181 EKLKPWPEKM AISCGSRAHL EKESIAQRSV FRTFLMYGFH FLVWFLCVRS VRDTQCGFKL 240
  241 LTREAATRTF SALHVDRWAF DVELLYIAQC LNIPVTEVAV NWTEIEGSKL VPFWSWLQMG 300
  301 RDLLFIRMRY LTGAWKIDTS GKLN

Type	Start	End	Confidence
Signal Peptide	1	31	0.98
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	324	0.92