YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147902164, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMNYNAKEE DGNHTSGLGP NLGKSKKPDN TAFKQQRLPA WQPILTAGTV LPAFFIIGIV  60
   61 FIPIGIGIFV TSNNIREFEI DYTGVDPSSP CYKCSNVTLN GPTCNCIINF TLDYAFESNV 120
  121 FMYYGLSNFY QNHRRYVKSR DDSQLNGDKN SLTNPSKECE PYRTNGSKPI APCGAIANSM 180
  181 FSDKLYLYQI AANGDETEIP LIKKGIAWWT DKNVKFKNPT GNTSNPESIF SGTTKPINWK 240
  241 KPVYELDSAD SDNNGFINED FIVWMRTAAL PTFRKLYRLI ERKDATYPAL APGNYSLHIE 300
  301 YNYPVLSFDG RKRMILSTIS WMGGKNPFLG IAYITVGSIC FFLGVVLFII HHKYGNRNNS 360
  361 ADIPN

Type	Start	End	Confidence
Cytoplasmic	1	43	0.61
Transmembrane Helix	44	70	0.84
Non-Cytoplasmic	71	328	0.58
Transmembrane Helix	329	351	0.93
Cytoplasmic	352	365	0.58