YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FACR1_XENLA
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSIPEFYQG KNVLITGATG FMGKVLLEKL LRSCPNTKAV YVLVRHKAGQ KPRERVAEMM  60
   61 SCKLFDKLRD EQPDCAQKVI AISSELTQPE LDMSKEDQDT LIDCIDIVFH CAATVRFNES 120
  121 LRDAMQLNVI ATRQLLYLAQ KMKKLEVFIH VSTAYANCNR KQIEEVVYPP PVDPKKLIES 180
  181 LEWMDDSLVN DITPKLIGDR PNTYTYTKAL AEYVVQQEGS KLNIAIVRPS IVGASWKEPF 240
  241 PGWIDNFNGP SGLFIAAGKG ILRTMRASNN AVADLIPVDV VVNTTLAAAW YSGVNRPKNM 300
  301 LVYNCTTGGT NPFHWGEVEY HVISTFKRNP LEQAFRRPNV NLTSNHLLYH YWIAVSHKAP 360
  361 ALLYDVYLRI TGRSPRMMKT ITRLHRAMML LEYFTSNSWV WNNENTNMLM SQLSPEDKKV 420
  421 FNFDVRQLHW AEYMENYCMG TKKYVLNEEM SGLPAARKHL NKLRNIRYGF NTILVVLIWR 480
  481 VFIARSQMAR NIWYFVVSMC FKFLSYFRAS STMRY

Type	Start	End	Confidence
Non-Cytoplasmic	1	347	0.64
Transmembrane Helix	348	368	0.40
Cytoplasmic	369	464	0.72
Transmembrane Helix	465	484	0.82
Non-Cytoplasmic	485	490	0.69
Transmembrane Helix	491	510	0.81
Cytoplasmic	511	515	0.71