YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38048543
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSLLLRSA VRCNAANIVK SARITPLKSY STLVANVQRK AVVQPLAVAK IAAPVVREIS  60
   61 VSAPRMAAAG SSHTLLWTVE RIVSAGLLAV IPAAFIAPSQ VLDALLAISV VIHTHWGVEA 120
  121 MVVDYMRPSV VGNVLPKVAH IALIIISVAA LGGLFYFIQN DVGLANGIKR FWAIKGKDA

Type	Start	End	Confidence
Cytoplasmic	1	81	0.91
Transmembrane Helix	82	116	0.69
Non-Cytoplasmic	117	137	0.54
Transmembrane Helix	138	159	0.92
Cytoplasmic	160	179	0.54