YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38000002, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDATMIASP FPAVEKCSSK DRGGDTIVAD LDGTLLCGRS SFPYFAHMAF ETGGVLRLLA  60
   61 LILLAPLAGV LYYLVSESAG IQVLIFASMA GARVADVEAV ARAVLPKFYC SDIHPESWRV 120
  121 FSACGRRCVL TANPRMMVEA FLKEYLGADI VVGTELVVWR GRATGLVRSP GVLVGENKAA 180
  181 ALREAFGDAS PEIGIGDRRT DYPFMRLCKE GYVVPVSPTP RPVPREELPK PVVFHDGRLV 240
  241 QKPSPALALL TVLWIPIGFV LACLRIAAGA LLPMRVVYHA FRALGVRVTV KGTPPPPASR 300
  301 ETGQSGVLFI CSHRTLLDPI FLSTALGRPI TAVTYSVSRL SEILSPIRTV RLTRDRAADA 360
  361 AMIRRLLAEG DLVICPEGTT CREPFLLRFS ALFAELTDEI VPVAMENQMS MFHGTTARGW 420
  421 KALDPFYFFM NPSPGYVVTF LSKLPGELTC NGGGGGGGGR SSHEVANYIQ RLIASTLSYE 480
  481 CTSFTRKDKY RALAGNDGTV VSKPNIDEKK AMGC

Type	Start	End	Confidence
Cytoplasmic	1	53	0.80
Transmembrane Helix	54	75	0.87
Non-Cytoplasmic	76	82	0.57
Transmembrane Helix	83	97	0.39
Cytoplasmic	98	246	0.57
Transmembrane Helix	247	269	0.81
Non-Cytoplasmic	270	514	0.58